Faculty

蔣榮先

Jung-Hsien Chiang

教授

Contact Info.

資訊系 / 資訊所 / AI學程 / 醫資所 / 成大醫院

  資訊系館

  06-2757575 ext 62534

  jchiang@mail.ncku.edu.tw

  Intelligent Information Retrieval Laboratory

      (CSIE Room 65604)

teacher

Research Interests

Biomedical Information Retrieval

Artificial Intelligence

Mobile Computing

Computational Intelligence

Cloud Healthcare

Cancer and Stem Cell Research

Big data Analysis 


School Record

U.S.A\University of Missouri\Department of Electrical Engineering and Computer Science\M.S.(1990-1992)

U.S.A\University of Missouri\Department of Electrical Engineering and Computer Science\Ph.D(1992-1995)

Record

Distinguished Professor, Department of Computer Science and Information Engineering, NCKU(2007-now)

CEO of Health Data Resource Center, NCKU Hospital(2020-now)

CIO of IT Office, NCKU Hospital(2019-2020)

Jointly Appointed Professor, Institute for Systems Biology(2012-now)

ISO 27001 Information Security Management System - Qualified Lead Auditor(2016-now)

BS 10012 Personal Information Management System - Qualified Lead Auditor(2015-now)

Patents

R.O.C/I659429 /互動式健康狀態評估系統及其方法
U.S.A/US10978209B2 /METHOD OF AN INTERACTIVE HEALTH STATUS ASSESSMENT AND SYSTEM 
Japan/7285598/対話型健康状態評価方法およびそのシステム
China/ZL 2018 8 0098934.X/互动式健康状态评估方法及其系统

Honor & Awards

World’s Top 2% Scientists 2021-2022, 2022-2023

     NCKU Distinguished Professor, 2012-2022

Healthcare+ Expo 2022 Highlights Top 10, 2022

17-19th National Innovation Award, 2020-2022

Future Tech Awards, 2020-2021

100 MVP Manager, 2020

Outstanding National ICT Elite Award, 2019

Publications

Accepted Papers to be Published

從A I到智慧醫療

當數位轉型碰上生成式AI

Refered Papers

 Ÿ  Mu-Hung Tsai, Joseph TC Chang, Hsi-Huei Lu, Yuan-Hua Wu, Tzu-Hui Pao, Yung-Jen Cheng, Wen-Yen Zheng, Chen-Yu Chou, Jing-Han Lin, Tsung Yu, Jung-Hsien Chiang / December 2023 / Development and validation of a machine learning model of radiation-induced hypothyroidism with clinical and dose–volume features / Radiotherapy and Oncology / 189,109911

Ÿ  Hsin-Hsiung Chang, Jung-Hsien Chiang, Chun-Chieh Tsai, Ping-Fang Chiu / June 2023 / Predicting Hyperkalemia inPatients with Advanced Chronic Kidney Disease Using The XGBoost Model / BMC nephrology / 24(1),169

Ÿ   Hsin-Hsiung Chang, Jung-Hsien Chiang, Chi-Shiang Wang, Ping-Fang Chiu, Khaled Abdel-Kader, Huiwen Chen, Edward D Siew, Jonathan Yabes, Raghavan Murugan, Gilles Clermont, Paul M Palevsky, Manisha Jhamb / September 2022 / Predicting Mortality Using Machine Learning Algorithms in Patients Who Require Renal Replacement Therapy in the Critical Care Unit / Journal of Clinical Medicine / 11(18), 5289

Ÿ   Chi-Shiang Wang, Fang-Yi Su, Jung-Hsien Chiang / July 2022 / MedCheX: An Efficient COVID-19 Detection Model for Clinical Usage / Journal of Information Science & Engineering / 38(4), 749-759

Ÿ   Pei-Yi Hao, Jung-Hsien Chiang, Yu-De Chen / May 2022 / Possibilistic Classification by Support Vector Networks / Neural Networks / 149,40-56

Ÿ   Ching-Ju Chiu,Lin-Chun Hua,Chieh-Ying Chou,Jung-Hsien Chiang / April 2022 / Robot-Enhanced Diabetes Care for Middle-Aged and Older Adults Living with Diabetes in the Community: A Small Sample Size Mixed-Method Evaluation /  Plos One / 17(4),e0265384

Ÿ   Jung-Hsien Chiang, Chung-Yao Ma, Chi-Shiang Wang, Pei-Yi Hao / January 2022 / An Adaptive, Context-Aware, and Stacked Attention Network-Based Recommendation System to Capture Users Temporal Preference / IEEE Transactions on Knowledge and Data Engineering / 1-1

Ÿ   Sina Abdollahi,Seyedeh Zahra Dehghanian,Liang-Yi Hung,Shiang-Jie Yang,Dao-Peng Chen,L Jeffrey Medeiros, Jung-Hsien Chiang, Kung-Chao Chang / October 2021 / Deciphering Genes Associated with Diffuse Large B-Cell Lymphoma with Lymphomatous Effusions: A Mutational Accumulation Scoring Approach / Biomark Research / 9(1),74

Ÿ   Hui-O Chen,Peng-Chan Lin,Chen-Ruei Liu,Chi-Shiang Wang,Jung-Hsien Chiang  / October 2021 / Contextualizing Genes by Using Text-Mined Co-Occurrence Features for Cancer Gene Panel Discovery / Frontiers in Genetic /  12,771435

Ÿ   Sina Abdollahi,Peng-Chan Lin,Jung-Hsien Chiang / October 2021 / WinBinVec: Cancer-Associated Protein-Protein Interaction Extraction and Identification of 20 Various Cancer Types and Metastasis Using Different Deep Learning Models /  IEEE Journal of Biomedical and Health Informatics / 25(10),4052-4063

Ÿ   Sina Abdollahi, Peng-Chan Lin, Meng-Ru Shen, Jung-Hsien Chiang / July 2021 / Precise Uncertain Significance Prediction Using Latent Space Matrix Factorization Models: Genomics Variant and Heterogeneous Clinical Data-Driven Approaches / Briefings in Bioinformatics / 22(4), bbaa281

Ÿ   Cheng-Yi Kao,Chiao-Yun Lin,Cheng-Chen Chao,Han-Sheng Huang,Hsing-Yu Lee,Chia-Ming Chang,Kang Sung,Ting Rong Chen,Po-Chang Chiang,Li-Ting Huang,Bow Wang,Yi-Sheng Liu,Jung-Hsien Chiang,Chien-Kuo Wang,Yi-Shan Tsai / June 2021 / Automated Radiology Alert System for Pneumothorax Detection on Chest Radiographs Improves Efficiency and Diagnostic Performance / Diagnostics / 2021,11(7),1182

Ÿ   Chi-Shiang Wang,Bo-Syun Chen,Jung-Hsien Chiang / June 2021/ TDD-BPR: The Topic Diversity Discovering on Bayesian Personalized Ranking for Personalized Recommender System /  Neurocomputing / 441, 202-213

Ÿ   Sina Abdollahi, Peng-Chan Lin, Jung-Hsien Chiang / May 2021 / DiaDeL: An Accurate Deep Learning-Based Model with Mutational Signatures for Predicting Metastasis Stage and Cancer Types / IEEE/ACM Transactions on Computational Biology and Bioinformatics / 19(3),1336-1343

Ÿ   Chi-Shiang Wang, Fang-Yi Su, Tsung-Lu Michael Lee, Yi-Shan Tsai, Jung-Hsien Chiang / May 2021 / CUAB: Convolutional Uncertainty Attention Block Enhanced the Chest X-ray Image Analysis / arXiv Preprint arXiv:2105.01840 / https://doi.org/10.48550/arXiv.2105.01840

Ÿ   Peng-Chan Lin,Hui-O Chen,Chih-Jung Lee,Yu-Min Yeh,Meng-Ru Shen,Jung-Hsien Chiang / January 2021 / Comprehensive Assessments of Germline Deletion Structural Variants Reveal the Association between Prognostic MUC4 and CEP72 Deletions and Immune Response Gene Expression in Colorectal Cancer Patients / Human Genomics / 15(1),3

Ÿ   Ping-Yen Liu,Yi-Shan Tsai,Po-Lin Chen,Huey-Pin Tsai,Ling-Wei Hsu,Chi-Shiang Wang,Nan-Yao Lee,Mu-Shiang Huang,Yun-Chiao Wu,Wen-Chien Ko,Yi-Ching Yang,Jung-Hsien Chiang,Meng-Ru Shen / October 2020 / Application of an Artificial Intelligence Trilogy to Accelerate Processing of Suspected Patients With SARS-CoV-2 at a Smart Quarantine Station: Observational Study / Journal of Medical Internet Research /  22(10):e19878

Ÿ   Mu-Shiang Huang, Chi-Shiang Wang, Jung-Hsien Chiang, Ping-Yen Liu, Wei-Chuan Tsai / September 2020 / Automated Recognition of Regional Wall Motion Abnormalities Through Deep Neural Network Interpretation of Transthoracic Echocardiography / Originally / 142(16),1510-1520

Ÿ   Kun-Hsing Yu, Tsung-Lu Michael Lee, Ming-Hsuan Yen, S. C. Kou, Bruce Rosen, Jung-Hsien Chiang, Isaac S. Kohane / August 2020 / Reproducible Machine Learning Methods for Lung Cancer Detection Using Computed Tomography Images / Journal of Medical Internet Research / 22(8),e16709

Ÿ   D.A. Devyatkin1, A.I. Molodchenkov1, A.V. Lukin1, Y.S. Kim, A.A. Boyko, P.A. Karalkin, J.-H. Chiang,
G.D. Volkova, A.Yu. Lupatov / September 2019 / Towards Automated Meta-Analysis of Biomedical Texts in the Field of Cell-based Immunotherapy / Experimental Research / 2,3

Ÿ   Chia-Jung Yang, Jung-Hsien Chiang / December 2018 / Cateye: A Hint-Enabled Search Engine Framework for Biomedical Classification Systems / International Computer Symposium / 1013,758-763

Ÿ   RE Suvorov, Ya S Kim, AM Gisina, JH Chiang, KN Yarygin, A Yu Lupatov / November 2018 / Surface Molecular Markers of Cancer Stem Cells: Computation Analysis of Full-Text Scientific Articles / Bulletin of Experimental Biology and Medicine / 166(1),135-140

Ÿ   Chia-Jung Yang, Jung-Hsien Chiang / October 2018 / Gene Ontology Concept Recognition Using Named Concept: Understanding the Various Presentations of the Gene Functions in Biomedical Literature / Database: The Journal of Biological Databases and Curation / bay115

Ÿ   Kun-Hsing Yu, Tsung-Lu Michael Lee, Yu-Ju Chen, Christopher Ré, Samuel C Kou, Jung-Hsien Chiang, Michael Snyder, Isaac S Kohane / August 2018 / A Cloud-Based Metabolite and Chemical Prioritization System for the Biology/Disease-Driven Human Proteome Project / Journal of Proteome Research / 17(12),4345-4357

Ÿ   Jui-Hung Chang, Chen-En Tsai, Jung-Hsien Chiang / July 2018 / Using Heterogeneous Social Media as Auxiliary Information to Improve Hotel Recommendation Performance / IEEE Access / 6,42647-42660

Ÿ   Yu Kun-Hsing, Lee Tsung-Lu Michael, Wang Chi-Shiang, Chen Yu-Ju, Re Christopher, Kou Samuel C., Chiang Jung-Hsien*, Kohane Isaac S., Snyder Michael / April 2018 / Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining / Journal of Proteome Research / 17(4),1383-1396 

Ÿ   Hsih-Te Yang, Jiun-Huang Ju, Yue-Ting Wong, Ilya Shmulevich, Jung-Hsien Chiang / May 2017 / Literature-Based Discovery of New Candidates for Drug Repurposing / Briefings in Bioinformatics / 18(3),488-497

Ÿ   Kim  YS,  Kaidina  AM, Chiang JH,  Yarygin KN, Lupatov  AY / January 2017 / Cancer Stem Cell Molecular Markers Verified in vivo / Biochemistry Moscow-Supplement Series B-Biomedical Chemistry / 11(1),43-54

Ÿ   Hung Shan,  Li Min-Shan, Chen  Yen-Lin, Chiang Jung-Hsien, Chen Ying-Yeh, Hung Galen Chin-Lun / October 2016 / Smartphone-Based Ecological Momentary Assessment for Chinese Patients with Depression: An Exploratory Study in Taiwan / Asian Journal of Psychiatry / 23,131–136

Ÿ   Yang HT, Yang H, Chiang JH, Wang SJ / October 2016 / Translating Genomic Sequences into Antibody Efficacy and Safety Against Influenza toward Clinical Trial Outcomes: A Case Study / Drug Discovery Today / 21(10),1664-1671

Ÿ   Galen Chin-Lun Hung, Pei-Ching Yang, Chia-Chi Chang, Jung-Hsien Chiang, Ying-Yeh Chen / July 2016 / Predicting Negative Emotions Based on Mobile Phone Usage Patterns: An Exploratory Study / JMIR Research Protocols / 5(3),e160

Ÿ   YS Kim, AM Kaidina, JH Chiang, KN Yarygin, A Yu Lupatov / March 2016 / Molecular Markers of Cancer Stem Cells Verified in Vivo / Biomeditsinskaya Khimiya / 62(3),228-38

Ÿ   Hung G.Chin-Lun, Li MS, Chen YL, Chiang JH / March 2016 / Capturing Depression with Your Smartphone: Validity and Utilization of iHOPE for Depressed Patients in Taiwan / European Psychiatry / 33,S283

Ÿ   Wen-Chieh Fang, Huan-Jui Chang, Chen Yang, Hsih-Te Yang, Jung-Hsien Chiang / December 2015 / A Boosting Approach for Predicting Slope of ALS / F1000Research / https://doi.org/10.7490/f1000research.1111120.1

Ÿ   WS Cheng, JH Chiang / January 2015 / Analysis of Prognostic Marker Panel for High-Grade Serous Ovarian Cancer through Age-Dependent DNA Methylation. J Phylogen Evolution Biol. 3: 153 / These Results also Indicated that Our Method Reliably Extracted Age-Dependent Markers with the Potential to Consider Further Clinical Testing / DOI:10.4172/2329-9002.1000153

Ÿ   Jung-Hsien Chiang, Jiun-Huang Ju / December 2014 / Discovering Novel Protein-protein Interactions by Measuring the Protein Semantic Similarity from the Biomedical Literature / Journal of Bioinformatics and Computational Biology / 12(6),SI 

Ÿ   Jung-Hsien Chiang, Pei-Ching Yang, Hsuan Tu / August 2014 / Pattern Analysis in Daily Physical Activity Data for Personal Health Management / Pervasive and mobile computing / 13,13-25

Ÿ   Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N Arighi, Peter McQuilton, G Thomas Hayman, Susan Tweedie, Mary L Schaeffer, Stanley JF Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong L / August 2014 / Overview of the Gene Ontology Task at BioCreative IV / Database-The Journal of Biological Databases and Curation / 25(2014),bau086

Ÿ   Jennifer M Holden, Ludek Koreny, Samson Obado, Alexander V Ratushny, Wei-Ming Chen, Jung-Hsien Chiang, Steven Kelly, Brian T Chait, John D Aitchison, Michael P Rout, Mark C Field / May 2014 / Nuclear Pore Complex Evolution: a Trypanosome Mlp Analogue Functions in Chromosomal Segregation but Lacks Transcriptional Barrier Activity / Molecular biology of the cell / 25(9),1421-1436

Ÿ   Jung-Hsien Chiang, Wan-Shu Cheng, Leroy Hood, and Qiang Tian / May 2014 / An Epigenetic Biomarker Panel for Glioblastoma Multiforme Personalized Medicine through DNA Methylation Analysis of Human Embryonic Stem Cell-like Signature / OMICS: A Journal of Integrative Biology / 18(5),310-323

Ÿ   Pei-Ching Yang, Chia-Chi Chang, Yen-Lin Chen, Jung-Hsien Chiang, Galen Chin-Lun Hung / April 2014 / Portable Assessment of Emotional Status and Support System / International Conference on Health Information Science / 8423,175-183

Ÿ   Jung-Hsien Chiang , Lin Chan-Hsien / March 2014 / NCS: Incorporating Positioning Data to Quantify Nucleosome Stability in Yeast / Bioinformatics / 30(6),761-767

Ÿ   Samuel A. Danziger,  Alexander V. Ratushny, Jennifer J. Smith, Ramsey A. Saleem, Yakun Wan, Christina E. Arens, Abraham M. Armstrong, Katherine Sitko, Wei-Ming Chen, Jung-Hsien Chiang,  David J. Reiss, Nitin S. Baliga,  John D. Aitchison / Februery 2014 / Molecular Mechanisms of System Responses to Novel Stimuli are Predictable from Public Data / Nucleic Acids Research / 42(3),1442-1460

Ÿ   Cheng, Wan-Shu, Chiang, Jung-Hsien / December 2013 / CGPredictor: A Systematic Integrated Analytic Tool for Mining and Examining Genome-scale Cancer Independent Prognostic Epigenetic Marker Panels / BMC Systems Biology / 7(6),S10

Ÿ   Wei-Ming Chen, Samuel A Danziger, Jung-Hsien Chiang, John D Aitchison / October 2013 / PhosphoChain: A Novel Algorithm to Predict Kinase and Phosphatase Networks from High-throughput Expression Data / Bioinformatics / 29(19),2435-44

Ÿ   Tsunglin Liu, Cheng-Hung Tsai, Wen-Bin Lee, Jung-Hsien Chiang / July 2013 / Optimizing Information in Next-Generation-Sequencing (NGS) Reads for Improving De Novo Genome Assembly / PLoS ONE / 8(7),e69503

Ÿ   Chiang JH, Chang DTH, Kao HY / April 2013 / Introduction to the 23rd International Conference on Genome Informatics (GIW2012) / Gene / 518(1),1-1特刊: SI

Ÿ   Van de Vosse DW, Wan Y, Lapetina DL, Chen WM, Chiang JH, Aitchison JD, Wozniak RW / February 2013 / A Role for the Nucleoporin Nup170p in Chromatin Structure and Gene Silencing / Cell / 152(5),969-983

Ÿ   Lee TLM, Chiang JH / November 2012 / A Systems Biology Approach to Solving the Puzzle of Unknown Genomic Gene-Function Association Using Grid-Ready SVM Committee Machines / IEEE Computational Intelligence Magazine / 7(4),46-54

Ÿ   Chang, DTH, Ke, CH, Lin JH, Chiang JH / 2012 / AutoBind: Automatic Extraction of Protein-Ligand Binding Affinity Data from Biological Literature / Bioinformatics / 28(16),2162-2168

Ÿ   Wan Yakuna, Chen Weimingb, Xing  Jiec, Tan Jinyina, Li Binga, Chen Huiyinga, Lin Zhanxianb, Chiang Jung-Hsienb, Saleem Ramsey A.d / October 2011 / Erratum: Transcriptome Profiling Reveals a Novel Role for Trichostatin A in Antagonizing Histone Chaperone Chz1 Mediated Telomere Anti-Silencing / FEBS Letters / 585(19),31463

Ÿ   Lin JW,  Chang CH,  Lin MW,  Ebell, MH,  Chiang JH / August 2011 / Automating the Process of Critical Appraisal and Assessing the Strength of Evidence with Information Extraction Technology / Journal of Evaluation in Clinical Practice / 17(4),832-838

Ÿ   Yakun Wan ,Weiming Chen, Jie Xing, Jinyin Tan, Bing Li, Huiying Chen, Zhanxian Lin, Jung- Hsien Chiang, Saleem Ramsey / August 2011 / Transcriptome Profiling Reveals a Novel Role for Trichostatin A in Antagonizing Histone Chaperone Chz1 Mediated Telomere Anti-Silencing / FEBS Letters / 585(15),2519-2525

Ÿ   Chiang JH,Liu HH, Huang YT / April 2011 / Condensing Biomedical Journal Texts through Paragraph Ranking / Bioinformatics / 27(8),1143-1149

Ÿ   Chao SY, Chiang JH, Huang AM, Chang WS / March 2011 / An Integrative Approach to Identifying Cancer Chemoresistance-Associated Pathways / BMC Medical GenomicEDICAL GENOMICS / 4,23

Ÿ   Yeh CY, Shin SM, Yeh HH, Wu TJ, Shin JW, Chang TY, Raghavaraju G, Lee CT, Chiang JH, Tseng VS, Lee YCG, Shen CH, Chow NH, Liu HS / April 2011 / Transcriptional Activation of the Axl and PDGFR-Alpha by C-Met through a Ras- and Src-Independent Mechanism in Human Bladder Cancer / BMC Cancer / 11,139

Ÿ Yang Pei-Chinga,Chiang Jung-Hsiena,Liu  Jen-Chub,Wen Yi-Lunc,Chuang Kuo-Yuc / December 2010 / An efficient Cloud for Wellness Self-Management Devices and Services / Proceedings - 4th International Conference on Genetic and Evolutionary Computing, ICGEC 2010 / 767-770

Ÿ   Michael T-L Lee, Jimmy J-M Su, Chi-Rong Li, Patrick Y-W Chu, Ming-Sheng Liu, Jung-Hsien Chiang, Kelvin K-C Tsai, Kok-Tong Tan / October 2010 / Gene Expression Signatures Associated with Protracted Stromal Responses to Therapeutically Relevant Cytotoxic Stimuli Predict Breast Cancer Chemoresponsiveness / Clinical Cancer Research / 16 (19_Supplement),B22

Ÿ   Chiang JH, Lin JW, Yang CW / May 2010 / Automated Evaluation of Electronic Discharge Notes to Assess Quality of Care for Cardiovascular Diseases Using Medical Language Extraction and Encoding System (MedLEE) / Journal of the American Medical Informatics Association / 17(3),245-252

Ÿ   Wan YK, Chiang JH, Lin CH, Arens CE, Saleem RA, Smith JJ , Aitchison JD / March 2010 / Histone Chaperone Chz1p Regulates H2B Ubiquitination and Subtelomeric Anti-silencing / Nucleic Acids Research / 38(5),1431-1440

Ÿ   Cheng LH, Lu W, Kulkarni B, Pejovic T, Yan, XW, Chiang JH,  Hood L, Odunsi K, Lin BY / March 2010 / Analysis of Chemotherapy Response Programs in Ovarian Cancers by the Next-Generation Sequencing Technologies / Gynecologic Oncology / 117(2)159-169

Ÿ   Shih-Yi Chao; Jung-Hsien Chiang / October 2009 / Reconstruct Feedback Control of Cell Cycle-Regulated Networks of the Yeast by Neural Network Computing / 2006 International Conference on Computing & Informatics / 5276483

Ÿ   Yung-Chun Chang, Pei-Ching Yang, Jung-Hsien Chiang / September 2009 / Ontology-Based Intelligent Web Mining Agent for Taiwan Travel / 2009 IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology / 3,421-424

Ÿ   Jung-Hsien Chiang / September 2009 / Tech-Ware: Bioinformatics and Computational Biology Resources [Best of the Web] / IEEE Signal Processing Magazine / 26(5),153-158

Ÿ   Hao PY, Chiang JH, Lin YH / 2009 / A New Maximal-margin Spherical-Structured Multi-class Support Vector Machine / Applied Intelligence / 30(2) 98-111

Ÿ   Wan YK, Saleem RA, Ratushny AV, Roda O, Smith JJ 1, Lin CH, Chiang JH, Aitchison JD / 2009 / Role of the Histone Variant H2A.Z/Htz1p in TBP Recruitment, Chromatin Dynamics, and Regulated Expression of Oleate-Responsive Genes / Molecular and Cellular Biology / 29(9),2346-2358

Ÿ   Majetl R, Becker MW, Tian Q, Lee TLM, Yan XW, Liu R, Chiang JH, Hood L, Clarke MF, Weissman IL / March 2009 / Dysregulated Gene Expression Networks in Human Acute Myelogenous Leukemia Stem Cells / Proceedings of the National Academy of Sciences of the United States of America / 106(9),3396-3401

Ÿ   Chiang JH, Ho SH, Wang WH / October 2008 / Similar Genes Discovery System (SGDS): Application for Predicting Possible Pathways by Using GO Semantic Similarity Measure / Expert Systems with Applications / 35(3),1115-1121

Ÿ   Chiang JH, Lee TLM / August 2008 / In Silico Prediction of Human Protein Interactions Using Fuzzy-SVM Mixture Models and Its Application to Cancer Research / IEEE Transactions on Fuzzy Systems / 16(4),1087-1095

Ÿ   Hao PY, Chiang JH / April 2008 / Fuzzy Regression Analysis by Support Vector Learning Approach / IEEE Transactions on Fuzzy Systems / 16(2),428-441

Ÿ   Chiang JH, Ho SH / March 2008 / A Combination of Rough-Based Feature Selection and RBF Neural Network for Classification Using Gene Expression Data / IEEE Transactions on Nanobioscience / 7(1),91-99

Ÿ   Yin ZX, Chiang JH / January 2008 / Novel Algorithm for Coexpression Detection in Time-Varying Microarray Data Sets / IEEE-ACM Transactions on Computational Biology and Bioinformatics / 5(1),120-135

Ÿ   Chiang JH, Yin ZX / November 2007 / Unsupervised Minor Prototype Detection Using an Adaptive Population Partitioning Algorithm / Pattern Recognition Attern Recognition / 40(11),3132-3145

Ÿ   Chiang JH, Liu HS, Chao SY, Chen CY / November 2007 / Discovering Gene-Gene Relations from Sequential Sentence Patterns in Biomedical Literature / Expert Systems with Applications / 33(4),1036-1041

Ÿ   Hao PY, Chiang JH, Tu YK / October 2007 / Hierarchically SVM Classification Based on Support Vector Clustering Method and Its Application to Document Categorization / Expert Systems with Applications / 33(3),627-635

Ÿ   Hao PY, Chiang JH / March 2007 / A Fuzzy Model of Support Vector Regression Machine / International Journal of Fuzzy Systems / 9(1)45-50

Ÿ   Chiang JH, Chao SY / March 2007 / Modeling Human Cancer-Related Regulatory Modules by GA-RNN Hybrid Algorithms / BMC Bioinfoamatics / 8,91

Ÿ   Hao PY, Chiang JH / August 2006 / Pruning and Model-Selecting Algorithms in the RBF Frameworks Constructed by Support Vector Learning / International Journal of Neural Systems / 16(4),283-293

Ÿ   Chiang JH, Shin JW, Liu HH, Chin CL / August 2006 / GeneLibrarian: An Effective Gene-Information Summarization and Visualization System / BMC Bioinformatics / 7,392

Ÿ   Chiang JH, Yu HC / August 2005 / Literature Extraction of Protein Functions Using Sentence Pattern Mining / IEEE Transactions on Knowledge and Data Engineering / 17(8),1088-1098

Ÿ   Chiang JH, Yue SH, Yin ZX / April 2004 / A New Fuzzy Cover Approach to Clustering / IEEE Transactions on Fuzzy Systems / 12(2),199-208

Ÿ   Chiang JH, Chen YC / March 2004 / An Intelligent News Recommender Agent for Filtering and Categorizing Large Volumes of Text Corpus / International Journal of Intelligent Systems / 19(3),201-216

Ÿ   Chiang JH, Hao PY / February 2004 / Support Vector Learning Mechanism for Fuzzy Rule-based Modeling: A New Approach / IEEE Transactions on Fuzzy Systems / 12(1),1-12

Ÿ   Chiang JH, Yu HC, Hsu HJ / January 2004 / GIS: A Biomedical Text-mining System for Gene Information Discovery / Bioinfoamatics/ 20(1),120-121

Conference Papers

International Conference

Ÿ Pei-Chen Tsai, Tsung-Hua Lee, Kun-Chi Kuo, Fang-Yi Su, Tsung-Lu Michael Lee, Eliana Marostica, Tomotaka Ugai,

Melissa Zhao, Mai Chan Lau, Juha P Väyrynen, Marios Giannakis, Yasutoshi Takashima, Seyed Mousavi Kahaki, Kana

Wu, Mingyang Song, Jeffrey A Meyerhardt, Andrew T Chan, Jung-Hsien Chiang, Jonathan Nowak, Shuji Ogino, Kun-

Hsing Yu/ Apr 2023 / Histopathology Images Predict Multi-Omics Aberrations and Prognoses in Colorectal Cancer

Patients / Nature Communications / 14(1),2102

Ÿ Cong Phuoc Phan, Jung Hsien Chiang / December 2022 / COVID-19 Deep Clustering: An Ontology

Constructionclustering Method with Dynamic Medical Labeling / The 11th International Symposium on Information

and Communication Technology / 4(10),795734

Ÿ   Yu Wen Fang, Fang-Yi Su, Jung-Hsien Chiang / July 2022 / Position Classifier: Rethinking Position Encoding on Chest

X-ray Diseases Identification / Medical Imaging with Deep Learning 2022 Conference Short

Ÿ   Hsin-Hsiung Chang, Jung-Hsien Chiang, Cheng-Chung Chu / July 2021 / Data-Driven Generation of Medical-Research

Hypotheses in Cancer Patients / 2021 IEEE 45th Annual Computers, Software, and Applications Conference

(COMPSAC) / 626-631

Ÿ   Chi-Shiang Wang, Hung-Chun Chne, Jung-Hsien Chiang / November 2019 / Discovering What You Cared by

Intelligent Recommender System / 2019 International Conference on Technologies and Applications of Artificial

Intelligence (TAAI) / 19279541

Ÿ   Chi-Shiang Wang, Jung-Hsien Chiang / June 2019 / FuzzAttention on Session-Based Recommender System /

2019 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) / 2019,8858856

Ÿ   Wen-Chieh Fang, Meng-Che Hsieh, Pei-Ching Yang, Wen-Gan Li, Ching-Ju Chiu, Jung-Hsien Chiang / December

2015 / iDianNao: An Orange Technology that Recommends Volunteer Opportunities to Older Adults / 2015 International

Conference on Orange Technologies (ICOT) / 38-41

Ÿ   Galen Chin-Lun Hung, Pei-Ching Yang, Chen-Yi Wang, Jung-Hsien Chiang / December 2015 / A Smartphone-Based

Personalized Activity Recommender System for Patients with Depression / Proceedings of the 5th EAI International

Conference on Wireless Mobile Communication and Healthcare / 253-257

Ÿ   Yu-De Chen, Juin-Huang Ju, Ming-Yu Chien, Yu-Cheng Sheng, Tsung-Lu Lee, Jung-Hsien Chiang / September 2015 /

CoTri: Extracting Chemical-Disease Relations with Co-Reference Resolution and Common Trigger Words / Proceedings

of the Fifth BioCreative Challenge Evaluation Workshop / 286-291

Ÿ   Wen-Chieh Fang, Pei-Ching Yang, Meng-Che Hsieh, Jung-Hsien Chiang / January 2015 / iDianNao: Recommending

Volunteer Opportunities to Older Adults / International Conference on Industrial, Engineering and Other Applications

of Applied Intelligent Systems / 9101,683-691

Ÿ   Jiun-Huang Ju, Yu-De Chen, Jung-Hsien Chiang / April 2012 / DrTW: A Biomedical Term Weighting Method for

Document Recommendation / 2012 BioCreative Workshop / 45

Ÿ   Chao-Hsuan Ke, Tsung-Lu Michael Lee, Jung-Hsien Chiang/ April 2012 / C2HI: a Complete Chemical Information

Decision System / 2012 BioCreative Workshop / 52

Ÿ   Heng-Hui Liu, Yi-Ting Huang, Jung-Hsien Chiang / December 2010 / A study on Paragraph Ranking and

Recommendation by Topic Information Retrieval from Biomedical Literature / 2010 International Computer Symposium

(ICS2010) / 2010,859-864

Ÿ   Wei-Ming Chen, I-Lin Wu, Jung-Hsien Chiang, Pei-Yi Hao / July 2010 / Prediction of subcelluar localization using

maximal-margin spherical support vector machine / 2010 International Conference on Machine Learning and Cybernetics

/ 3,1476-1481

Ÿ   Shih-Yi Chao, Jung-Hsien Chiang / June 2006 / Reconstruct Feedback Control of Cell Cycle-Regulated Networks of the Yeast by Neural Network Computing / 2006 International Conference on Computing & Informatics / 10975495

Ÿ   Chiang JH, Shin JW, Liu HH, Chin CL / April 2006 / Patterns Discovery on Complex Diagnosis and Biological Data

Using Fuzzy Latent Variables / 2007 IEEE 23rd International Conference on Data Engineering / 576-585

Ÿ   Jung-Hsien Chiang, Hsu-Chun Yu / January 2004 / Extracting Functional Annotations of Proteins Based on Hybrid Text

Mining Approaches / Proc BioCreAtIvE Challenge Evaluation Workshop / 10024688058

Projects

National Science Council Projects

Constructing a Novel AI Training Pipeline: From Flexible Annotation Tool to Lifelong Learning II/2023-2025/NSTC

Study of a Novel Latent Diffusion Model for Improving Medical Image Quality and It's Applications in Cone-beam Computed Tomography based Image-Guided Radiotherapy/2023-2025/NSTC

Constructing a Novel AI Training Pipeline: From Flexible Annotation Tool to Lifelong Learning/2021-2023/MOST

Developing an Early Lung Solitary Nodules Detection System based on Contrastive Convolutional Uncertainty Attention Block Learning Framework/2021-2023/MOST

An intelligent robot to prevent medical staff from direct interaction with COVID 19 suspected patients and assists medical staff handling with unnecessary manual work/2020-2021/MOST

Constructing a Hybrid Interactive Learning-based Inference Mechanism for Homecare Robots and their Applications for Elderly Users and Patients with Diabetes /2018-2020/MOST

Constructing An Intelligent Deep Recurrent Neural Network and Semantic Analysis-based Recommender System from Heterogeneous Social Data/2017-2019/MOST

Building A Green Campus Computer Center and Cloud Computing Facility in NCKU/2015-2017/MOST

Identification of cancer stem cell surface markers by computational meta-analysis of the available flow cytometry and high-throughput 'omics' data/2015-2017/MOST

Constructing A Novel Big Biodata Semantic Web Query Analysis Framework Towards the Identification of Drug Repurposing Opportunities/2014-2017/MOST

General Projects

Constructing a Deep Learning-based Model to Detect Lung Nodules from Chest X-ray Images/2021/MOHW

Building an Elders Information Based on Special Network/2014/ITRI

Students

Students

博士班:

6th:Mu-Hung Tsai, Hui-O Chen

4rd:Liang-Cheng Chen

3nd:Pei-Chen Tsai, Cong-Phuoc Phan

2st:Fang-Yi Su

1st:I-Quan Chou, Yuk-Hing NG, I-Lian Tsai




碩士班:

2nd:Ching-Chieh Tsao, Tzu-Hung Chang, Yu-Hsuan Liu, Ngo Gia Han

1st:Guan-Yu Chen, Po-Chin Lin, Chang-Yi Yen, Phan Ben, Yi-Xuan Dong


Honor & Awards

  • 2023 Ph.D. Cong-Phuoc Phan won the Third Place in BioCreative VIII.
  • 2022 M.S. Yu-Wen Fang won the First Place and Creativity Award in the         Ministry of Education National AI Competition for Agricultural Article           Text Annotation and Recognition.
  • 2022 UNESCO IRCAI  Excellent AI Team Globe Top 100
  • 2021 UNESCO IRCAI Outstanding AI Team Globe Top 10 
  • 2021 M.S. Li-Jin Huang won Honorable Mention Award in TSC Thesis            Award
  •  2020 Ph.D. Chi-Shiang Wang, M.S. Huang-Pin Chiu, and M.S. Chao-               Yi Wu won the First prize in BuildforCOVID19 Global Online Hackathon
  • 2019 Undergraduate Students Ling-Xuan Ying, Yu-Chieh Chou, and               Ping- Yu Lin won the Third Place Award in the Ministry of Education             National College AI CUP 2019 Biomedical Paper Automatic Analysis               Official Competition
  • 2018 Ph.D. Chia-Jung Yang won Best Paper Award in International                 Computer Symposium
  • 2015 Won the Second place in DREAM Challenge - Prostateb                         Cancer of world compitition. Invited to the United States to present the           findings at the RECOMB/ISCB conference
  • 2015 Won the First place in DREAM ALS Stratification Prize4Life                 Challenge of world compitition. Invited to the United States to present             the findings at the RECOMB/ISCB conference
  •  2013 Excellent results in BioCreative IV-Track 4- GO Task, with an                 invitation to present the findings in the United States and publication in           the conference proceedings
  • 2012 Won the First place in 中華電信創新應用大賽, 行動應用校園組, 急救         指導
  • 2012 Won the Third Place in 華義創新軟體, 競賽行動應用校園組,                    I-HOME 
  • 2011 Won Mobileheros, Android使用者介面設計競賽, 勇闖烏迪島企業特       別獎 
  • 2011 Won the Third Place of 行動應用校園組, Let's Point! in 中華電信創       新應用大賽
  • 2011 Won Honorable Mention Award in 中華電信應用軟體大賽, 行動應         用遊戲校園組, 食材達人
  • 2011 Won Honorable Mention Award in 中華電信應用軟體大賽, 行動應         用遊戲校園組, 享瘦大富翁
  • 2010 WoHonorable Mention Award in 中華電信應用軟體大賽, 行動應         用組校園組, 我願意餵你 
  • 2010 Won 校園菁英獎 in Mobileheros Android使用者介面設計競賽,               O~Sport 
  • 2008 TEBMA Dissertation Award
  • 2003 Ph.D. Pei-Yi Hao won Dragon Thesis Award
  • 2001 Ph.D. Pei-Yi Hao won 6th TAAI Dissertation Award
  • 2000 M.S. Heng-Siou Chang won Dragon Thesis Award

International Conference

  • 2023 BioCreative VIII
  • 2023 Conference on File and Storage Technologies
  • 2022 GIW2022 XXXI/ISCB-Asia V (International Conference on Genome Informatics), Chair
  • 2022 MIDL (Medical Imaging with Deep Learning) Conference Short
  • 2022 Global Health and Welfare Forum in Taiwan, Speaker 
  • 2022APEC Conference on Digital Healthcare Innovation -- COVID-19 Response by Health Information Utilization, Speaker
  • 2021 EuroAsia Smart Emergency and Critical Care, Speaker
  • 2018 Data Storage, Management & Analytics User Conference, Accelerate
  • 2018 AI PROJECTANIME International Conference
  • 2017 Microsoft Information Center Summit
  • 2017 7th EU Biomedical Electronic Conference
  • 2017 MathWorks Asia Research Summit
  • 2016 Advanced Cloud Technology and Data Center Symposium
  • 2012-2014 International Conference on Genome Informatics (GIW)
  •          2012, Chair
  • 2014 The Design Conference for People Who Make Websites
  • 2014 The IEEE World Congress on Computational Intelligence (IEEE WCCI)
  • 2014 The 18th Pacific-Asia Conference on Knowledge Discovery and Data Mining(PAKDD)
  • 2013 IEEE Congress on Evolutionary Computation (IEEE CEC)
  • 2013 International Conference on Electrical Engineering and Computer Sciences (EECS)
  • 2010 Systems Biology and Bioinformatics Symposium
  • 2003 Int’l Conference on Fuzzy Systems, PC member
  • 2002 The ninth Bellman Continuum International Workshop on Uncertain Systems and Soft Computing, PC member
  • 1999 Int’l Conference on Fuzzy Systems (IFSA'99) Financial, Co-chair
  • 1998 IEEE Int’l Conference on Tools with Artificial Intelligence, PC member